Man pages for ryanrsun/LungCancerAssoc
Pathway Analysis Using Summary Statistics

bader_apr1_pathwaysPathway table saved from 'pathways_to_test_062817_sorte.txt
check_inputsCheck inputs to run_pathwayanal() for errors.
clean_1000G_rawclean_1000G_raw.R
define_pathway_locdefine_pathway_loc.R
ensembl_hg19_oct17Hg19 Gene table using mostly Ensembl annotations
ensembl_refgene_hg19_20171206Hg19 Gene table using mostly Ensembl annotations
ensembl_refgene_hg19_20180109Hg19 Gene table using mostly Ensembl (v90) annotations
helloHello, World!
match_ped_summarymatch_ped_summary.R
PCs_1000G_EuroPCs for 1000G population of 350 European subjects
prune_snpsprune_snps.R
query_1000Gquery_1000G.R
run_pathwayanalBasically the same as run_pathwayanal.R with an additional...
run_pathwayanal_partHigh-level function to control pathway analysis.
run_testsrun_tests.R
ryanrsun/LungCancerAssoc documentation built on Feb. 6, 2018, 9:20 p.m.