ensembl_refgene_hg19_20171206: Hg19 Gene table using mostly Ensembl annotations
In ryanrsun/LungCancerAssoc: Pathway Analysis Using Summary Statistics

Description Usage Format Examples

See make_ensembl_gene_list.R for information on how we created this table. There are a small number (17) of genes with N/A chromosome - that's just how they came to us from refgene (and were not in ensembl). A '2' in the Notes column means it is a duplicate entry of another gene with the same HGNC name - sometimes refgene puts the same gene on multiple chromosomes or in multiple bands along the same chromosome. There will be another entry with the same HGNC name and a '1' in the Notes column, this is the primary entry.

1	data(ensembl_refgene_hg19_20171206)

A data table with the transcription start/stop point for >48,000 genes.

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data(ensembl_refgene_hg19_20171206)
FGFR2_row <- which(ensembl_refgene_hg19_20171206$HGNC_name == 'FGFR2')
print(ensembl_refgene_hg19_20171206[FGFR2_row, ])