Man pages for rzaied/scSubset
Visualize the effect of cell count in a scRNA-seq analysis pipeline
| computeCost | Single Cell compute cost Tab Server |
| computeCostUI | Single Cell compute cost Tab UI |
| conservedMarkersUI | Single Cell conserved markers Tab UI |
| findConservedMarkers | Single Cell conserved markers Server |
| findDEgenes | Single Cell differential expression Server |
| findDEgenesUI | Single Cell differential expression Tab UI |
| findMarkerGenes | Single Cell marker genes Server |
| findMarkerGenesUI | Single Cell marker genes Tab UI |
| make_seurat_obj | Function to create seaurat object |
| Mode | Function to find Mode |
| projectClusters | Function to project downsampled subsets against the parent... |
| read_10x | #' Single Cell 10x data reading Tab Server |
| read_h5 | #' Single Cell .h5 data reading Tab Server |
| renameClusters | Function to reassign cluster labels across downsampled... |
| scClustering | Single Cell Cluster Tab Server |
| scClusteringUI | Single Cell Cluster Tab UI |
| scIntegrate | #' Single Cell Integration Tab Server |
| scSubsetGo | Function to load required dependanies and start Shiny session |
| scVarGenes | Single Cell Variable genes Tab Server |
| server | Initialize Server |
| tableParserCMG | Function that iterates through cell markers and record their... |
| tableParserDEG | Function that iterates through differentially expressed genes... |
| tableParserMG | Function that iterates through cell markers and record their... |
| ui | Initiate GUI |
| varGenesUI | Single Cell Variable Genes Tab UI |
