scIntegrate: #' Single Cell Integration Tab Server

In rzaied/scSubset: Visualize the effect of cell count in a scRNA-seq analysis pipeline

Description

#' Single Cell Integration Tab Server

Usage

scIntegrate(input, output, session, seurat, seurat2, mito, res)

Arguments

seurat	Reactive value containing seurat object
seurat2	Reactive value containing seurat object
mito	Reactive value containing user input for mitochondrial genes pattern
res	Reactive value containing user input for clustering resolution
dataset	Reactive value containg user input of uploaded dataset name

Value

Returns a Reactive value containing list of downsampled seurat objects with reduced dimensions (PCA data) and scaled counts

rzaied/scSubset documentation built on Dec. 22, 2021, 8:19 p.m.