computeCost: Single Cell compute cost Tab Server

In rzaied/scSubset: Visualize the effect of cell count in a scRNA-seq analysis pipeline

Description

Single Cell compute cost Tab Server

Usage

computeCost(
  input,
  output,
  session,
  analysis_type,
  combinedConsMarkersTable,
  combinedMarkersTable,
  seuratObjectsList,
  costPerMil,
  depthPerCell
)

Arguments

analysis_type	Reactive value containing type of analysis (integrated vs single analysis)
combinedConsMarkersTable	Reactive value containing a table that lists conserved markers per cluster per subset if the "find conserved markers" option was selected
seuratObjectsList	Reactive value containing list of downsampled seurat objects with reduced dimensions (PCA data), scaled counts, and cluster labels that corresponds across subsets
costPerMil	Reactive value containing cost of sequencing one million reads
depthPerCell	Reactive value containing the depth of sequencing per cell selected by the user

rzaied/scSubset documentation built on Dec. 22, 2021, 8:19 p.m.