callPeaks: Call peaks from DamID-seq data

Description Usage Arguments Value

View source: R/callPeaks.R

Description

Test each restriction fragment for differential methylation and combine into peak regions.

Usage

1
callPeaks(object, alpha = 0.05, lfc = 0)

Arguments

object

A RangedSummarizedExperiment object containing normalised counts.

alpha

Threshold adjusted P value for declaring whether a peak is statistically significant.

lfc

A non-negative value which specifies a log2 fold change threshold.

Value

A GRanges object of peak regions.


s1437643/damR documentation built on Oct. 5, 2020, 12:33 p.m.