callPeaks: Call peaks from DamID-seq data
In s1437643/damR: Analysis, interpretation, and visualization of DamID-seq data
Description
Usage
Arguments
Value
Description
Test each restriction fragment for differential methylation and combine into peak regions.
Usage
1
callPeaks(object, alpha = 0.05, lfc = 0)
Arguments
object
A RangedSummarizedExperiment object containing normalised counts.
alpha
Threshold adjusted P value for declaring whether a peak is statistically significant.
lfc
A non-negative value which specifies a log2 fold change threshold.
Value
A GRanges object of peak regions.
s1437643/damR documentation built on Oct. 5, 2020, 12:33 p.m.
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Description Usage Arguments Value
Description
Test each restriction fragment for differential methylation and combine into peak regions.
Usage
1 | callPeaks(object, alpha = 0.05, lfc = 0)
|
Arguments
object |
A RangedSummarizedExperiment object containing normalised counts. |
alpha |
Threshold adjusted P value for declaring whether a peak is statistically significant. |
lfc |
A non-negative value which specifies a log2 fold change threshold. |
Value
A GRanges object of peak regions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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