searchMotif: Known motif search
In s1437643/damR: Analysis, interpretation, and visualization of DamID-seq data
Description
Usage
Arguments
Value
Description
Search peak regions for known motifs using a position weight matrix.
Usage
1
searchMotif(object, ranges, matrix)
Arguments
object
A BSgenome, DNAStringSet, or FaFile object.
ranges
A GRanges object of peak regions.
matrix
A position weight matrix of the known motif.
Value
A GRanges object with additional metadata columns:
motifCenter
The position of the motif center.
motifScore
The score of the motif match.
s1437643/damR documentation built on Oct. 5, 2020, 12:33 p.m.
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Description Usage Arguments Value
Description
Search peak regions for known motifs using a position weight matrix.
Usage
1 | searchMotif(object, ranges, matrix)
|
Arguments
object |
A |
ranges |
A |
matrix |
A position weight |
Value
A GRanges object with additional metadata columns:
motifCenter |
The position of the motif center. |
motifScore |
The score of the motif match. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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