AddNodes: AddNodes

In saeyslab/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

AddNodes

Description

Function plots the nodes

Usage

AddNodes(
  p,
  nodeInfo = NULL,
  values = NULL,
  lim = NULL,
  colorPalette = NULL,
  fillColor = "white",
  showLegend = TRUE,
  label = "",
  ...
)

Arguments

p	ggplot object
nodeInfo	Dataframe with for every node an x, y and size value, if null the dataframe from the ggplot object will be reused.
values	Values used for coloring the nodes. Default = NULL, in which case all nodes are filled in fillColor.
lim	The limits of the color scale, not used if values = NULL.
colorPalette	Color palette for color in nodes, not used if values = NULL. A vector of colors or a color function.
fillColor	Fixed fill for node colors, default = white.
showLegend	Boolean, default = TRUE.
label	Title for the legend.
...	Additional arguments to pass to geom_circle

Value

Returns nothing, but plots the nodes

See Also

PlotFlowSOM, PlotMarker, PlotVariable, AddLabels, AddBackground, AddPies, AddStars, AddStarsPies

saeyslab/FlowSOM documentation built on July 6, 2024, 10:59 a.m.