MetaclusterMFIs: MetaclusterMFIs

View source: R/6_deprecated.R

MetaclusterMFIsR Documentation

MetaclusterMFIs

Description

Compute the median fluorescence intensities for the metaclusters

Usage

MetaclusterMFIs(fsom)

Arguments

fsom

Result of calling the FlowSOM function

Value

Metacluster MFIs

Examples

fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
ff <- flowCore::read.FCS(fileName)
ff <- flowCore::compensate(ff,ff@description$SPILL)
ff <- flowCore::transform(ff,
         flowCore::transformList(colnames(ff@description$SPILL),
                                flowCore::logicleTransform()))
flowSOM.res <- FlowSOM(ff,scale=TRUE,colsToUse=c(9,12,14:18),maxMeta=10)
mfis <- GetMetaclusterMFIs(flowSOM.res)

saeyslab/FlowSOM documentation built on July 6, 2024, 10:59 a.m.