Files in saezlab/CNORfeeder
Integration of CellNOptR to add missing links

DESCRIPTION
NAMESPACE
NEWS
R/Binference.R R/MIinference.R R/addLink.R R/addLinkAND.R R/buildFeederObjectDynamic.R R/computeMSE.R R/computeScoreT1W.R R/cutModelW.R R/downCueGraph.R R/gaBinaryT1W.R R/getFitW.R R/getLBodeContObjFunctionWeighted.R R/identifyMisfitIndices.R R/integrateLinks.R R/linksRanking.R R/makeBTables.R R/mapBTables2model.R R/mapDDN2model.R R/parEstimationLBodeSSmWeighted.R R/parEstimationLBodeWeighted.R R/preprocessingWeighted.R R/runDynamicFeeder.R R/searchLinkGraph.R R/searchPPIigraph.R R/upSignalGraph.R R/weighting.R
README.rst
Readme.md
data/CNOlistToy_Gene.RData
data/PPINigraph.RData
data/ToyModelPB.RData
data/ToyModelPBCNOlist.RData
data/ToyModel_Gene.RData
data/UniprotIDdream.RData
data/database.RData
data/feederObject_toy.RData
data/indices.RData
data/integratedModel_toy.RData
data/simData_toy.RData
inst/NEWS.Rd
inst/unitTests/test_inference.R inst/unitTests/test_integration.R inst/unitTests/test_weighting.R man/Binference.Rd man/CNORfeeder-package.Rd man/MIinference.Rd man/PPINigraph.Rd man/UniprotIDdream.Rd man/buildFeederObjectDynamic.Rd man/cnolist.Rd man/database.Rd man/feederObject.Rd man/gaBinaryT1W.Rd man/identifyMisfitIndices.Rd man/indices.Rd man/integrateLinks.Rd man/integratedModel.Rd man/linksRanking.Rd man/makeBTables.Rd man/mapBTables2model.Rd man/mapDDN2model.Rd man/model.Rd man/runDynamicFeeder.Rd man/simData.Rd man/weighting.Rd tests/runTests.R
vignettes/CNORfeeder-vignette.Rnw
vignettes/CNORfeeder-vignette.pdf vignettes/DDN.pdf vignettes/Dynamic-Feeder-Pipeline.pdf
vignettes/Figure1.png
vignettes/SimResultsT1_1.pdf vignettes/data.pdf vignettes/feeder-model.pdf vignettes/initial-fit.pdf vignettes/initial-model.pdf vignettes/integratedModel.pdf vignettes/optModel.pdf vignettes/post-fit-high.pdf vignettes/post-fit-low.pdf
saezlab/CNORfeeder documentation built on Feb. 14, 2023, 3:23 p.m.