computeScoreFuzzy: Compute Score of a model compared to the data for a given...

In saezlab/CNORfuzzy: Addon to CellNOptR: Fuzzy Logic

Description

compute and return score of a model (cut using a bitstring).

Usage

computeScoreFuzzy(CNOlist, model,simList=NULL, indexList=NULL, paramsList, 
    intString=NULL, sizeFac=0.0001,NAFac=1)

Arguments

CNOlist	a CNOlist on which the score is based (based on valueSignals[[2]], i.e. data at t1)
model	a model list
simList	a list that contains additional fields for the simulator, as created by prep4sim applied to the model above
indexList	a list of indexes of species stimulated/inhibited/signals, as produced by indexfinder applied on the model and CNOlist above
paramsList	list of parameters. See defaultParametersFuzzy
intString	a bitstring of the same size as the number of reactions in the model above
sizeFac	the scaling factor for the size term in the objective function, default to 0.0001
NAFac	the scaling factor for the NA term in the objective function, default to 1

Value

score

See gaBinaryT1 for details

Author(s)

T. Cokelaer

saezlab/CNORfuzzy documentation built on May 3, 2019, 1:49 p.m.