compileMultiRes: Compiles results from multiple runs and produces graph for...

In saezlab/CNORfuzzy: Addon to CellNOptR: Fuzzy Logic

Description

This function takes a list of objects returned by CNORwrapfuzzy (run using identical parameters, models, and data) and packages them together so they can be compared with plotMeanFuzzyFit and writeFuzzyNetwork. Because almost all training of cFL models are underdetermined problems, analyzing multiple runs together is essential.

Usage

	compileMultiRes(allRes, tag=NULL, show=TRUE)

Arguments

allRes	list of objects returned by the CNORwrapFuzzy function.
tag	If provided, save the results in 3 files. Each file starts with the string "filename" that is provided. (<tag>_allRes.RData, <tag>_allFinalMSEs.RData and <tag>_allFinalNumParams.RData)
show	plot the MSE and mean number of parameters versus threshold. Can be switch off if show=FALSE

Author(s)

M.K. Morris, T. Cokelaer

Examples

    data(ToyModel, package="CellNOptR")
    data(CNOlistToy,package="CellNOptR")
    paramsList = defaultParametersFuzzy(CNOlistToy, ToyModel)
    N = 10
    allRes = list()
    ## Not run: 
        for (i in 1:N){
            Res = CNORwrapFuzzy(CNOlistToy, ToyModel, paramsList)
            allRes[[i]] = Res
        }

        summary = compileMultiRes(allRes)
        summary$allFinalMSEs
        summary$allFinalNumParams
    
        # You can save the resuls in files using the tag argument
        compileMultiRes(allRes, "output")
    
## End(Not run)

saezlab/CNORfuzzy documentation built on May 3, 2019, 1:49 p.m.