getRefinedModel: Refinement of Parameters of cFL model

In saezlab/CNORfuzzy: Addon to CellNOptR: Fuzzy Logic

Description

Performs refinement of cFL model parameters

Usage

getRefinedModel(res,CNOlist,cutModel, cutSimList, refParams)

Arguments

res	Optimum returned by gaDiscreteT1
CNOlist	a CNOlist on which the score is based (based on valueSignals[[2]], i.e. data at T1)
cutModel	Model (with unnesssary edges cut in reduceFuzzy or interpretDiscreteGA
cutSimList	Fields for simulation based on cutModel (again, cut with reduceFuzzy or interpretDiscreteGA)
refParams	parameter list object as returned by defaultParametersFuzzy.

Details

After the discreteGA chooses transfer functions from a discrete set of transfer functions and removing interactions inconsistent with the data, this function 'refines' the parameters by using optim to go to the local minimum of error to data

Value

refModel	A refined model
finalSet	Set of final fuzzy parameter
MSE	The MSE value

Author(s)

M.K. Morris

See Also

gaDiscreteT1, reduceFuzzy, interpretDiscreteGA

saezlab/CNORfuzzy documentation built on May 3, 2019, 1:49 p.m.