Files in saezlab/PHONEMeS
tool to run PHONEMeS on phosphoproteomic data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
PHONEMeS.Rproj
R/benchmark.R
R/data.R
R/default_carnival_options.R
R/run_phonemes.R
R/vanilla_phonemes.R
README.md
data-raw/phonemesKSN.R
data-raw/phonemesPKN.R
data/phonemesKSN.rda
data/phonemesPKN.rda
data/ppsp_regsites.RData
data/tutorialData.rda
inst/figures/logo.png
man/benchmark_regulatory_psites.Rd
man/check_carnival_options.Rd
man/default_carnival_options.Rd
man/extract_subnetwork.Rd
man/get_protein_network.Rd
man/phonemesKSN.Rd
man/phonemesPKN.Rd
man/process_phosphositeplus_regpsites.Rd
man/reattach_psites.Rd
man/regulatory_psites.Rd
man/run_phonemes.Rd
man/run_vanilla_phonemes.Rd
vignettes/.gitignore
vignettes/PHONEMeS.Rmd
vignettes/tutorial.Rmd
vignettes/tutorial.md
website/Medio-webfont.eot
website/Medio-webfont.svg
website/Medio-webfont.ttf
website/Medio-webfont.woff
website/fontlicense.txt
website/images/bg.jpg
website/images/doc.jpg
website/images/example.jpg
website/images/logo.jpg
website/images/package.jpg
website/index.html
website/license.txt
website/print.css
website/styles.css
