phonemesKSN: The KSN used as prior knowledge network when running vanilla...

In saezlab/PHONEMeS: tool to run PHONEMeS on phosphoproteomic data

The KSN used as prior knowledge network when running vanilla Phonemes. The KSN contains kinase-substrate interactions via a phosphorylation site

Description

The KSN used as prior knowledge network when running vanilla Phonemes. The KSN contains kinase-substrate interactions via a phosphorylation site

Format

The full PKN contains 37,631 kinase-substrate interactions via a phosphorylation site (1,710 kinases; 15,413 phosphosites)

source

upstream kinase/phosphorylation site

interaction

connection (1)

target

downstream phosphorylation site/kinase

Source

https://github.com/saezlab/PHONEMeS/blob/master/data-raw/phonemesKSN.R

Examples

data("phonemesKSN")

saezlab/PHONEMeS documentation built on May 2, 2024, 11:12 a.m.