phonemesPKN: The main PKN used in Phonemes to link deregulated...
In saezlab/PHONEMeS: tool to run PHONEMeS on phosphoproteomic data
phonemesPKN R Documentation
The main PKN used in Phonemes to link deregulated phosphosites to perturbed kinases.
It combines kinase-substrate and protein-protein interactions.
Description
The main PKN used in Phonemes to link deregulated phosphosites to perturbed kinases.
It combines kinase-substrate and protein-protein interactions.
Format
The full PKN contains 56,738 interactions: 36,915 kinase-substrate interactions (1,688 kinases; 15,385 phosphosites); 19,823 protein-protein interactions
- source
upstream protein
- interaction
activation/inhibition (1/-1)
- target
downstream protein/phosphorylation site
Source
https://github.com/saezlab/PHONEMeS/blob/master/data-raw/phonemesPKN.R
Examples
data("phonemesPKN")
saezlab/PHONEMeS documentation built on May 2, 2024, 11:12 a.m.
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| phonemesPKN | R Documentation |
The main PKN used in Phonemes to link deregulated phosphosites to perturbed kinases. It combines kinase-substrate and protein-protein interactions.
Description
The main PKN used in Phonemes to link deregulated phosphosites to perturbed kinases. It combines kinase-substrate and protein-protein interactions.
Format
The full PKN contains 56,738 interactions: 36,915 kinase-substrate interactions (1,688 kinases; 15,385 phosphosites); 19,823 protein-protein interactions
- source
upstream protein
- interaction
activation/inhibition (1/-1)
- target
downstream protein/phosphorylation site
Source
https://github.com/saezlab/PHONEMeS/blob/master/data-raw/phonemesPKN.R
Examples
data("phonemesPKN")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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