Man pages for saezlab/PHONEMeS
tool to run PHONEMeS on phosphoproteomic data
| benchmark_regulatory_psites | benchmark_regulatory_psites |
| check_carnival_options | Check CARNIVAL Options |
| default_carnival_options | Setting Default CARNIVAL Options |
| extract_subnetwork | extract_subnetwork |
| get_protein_network | get_protein_network |
| phonemesKSN | The KSN used as prior knowledge network when running vanilla... |
| phonemesPKN | The main PKN used in Phonemes to link deregulated... |
| process_phosphositeplus_regpsites | process_phosphositeplus_regpsites |
| reattach_psites | Reattach_psites |
| regulatory_psites | regulatory_psites |
| run_phonemes | Run PHONEMeS |
| run_vanilla_phonemes | Run vanilla PHONEMeS (PHONEMeS v1.0.0) |
