compile_ligrec: Function to get unfiltered intercell resources For each...

View source: R/get_omnipath.R

compile_ligrecR Documentation

Function to get unfiltered intercell resources For each resource and OmniPath variant compiles tables of ligands, receptors and interactions

Description

Function to get unfiltered intercell resources For each resource and OmniPath variant compiles tables of ligands, receptors and interactions

Usage

compile_ligrec(lr_pipeline = TRUE)

Arguments

lr_pipeline

bool whether to format for lr_pipeline and remove

duplicate LRs (mainly from composite OmniDB due to category (adhesion vs lr))

Details

calls on omnipath_intercell, intercell_connections, get_partners, and intercell_connections

Value

A list of OmniPath resources formatted according to the method pipes


saezlab/ligrec_decoupler documentation built on Aug. 10, 2024, 8:56 a.m.