compile_ligrec: Function to get unfiltered intercell resources For each...
In saezlab/ligrec_decoupler: LIANA: a LIgand-receptor ANalysis frAmework
compile_ligrec R Documentation
Function to get unfiltered intercell resources
For each resource and OmniPath variant compiles tables of ligands,
receptors and interactions
Description
Function to get unfiltered intercell resources
For each resource and OmniPath variant compiles tables of ligands,
receptors and interactions
Usage
compile_ligrec(lr_pipeline = TRUE)
Arguments
lr_pipeline
bool whether to format for lr_pipeline and remove
duplicate LRs (mainly from composite OmniDB due to category (adhesion vs lr))
Details
calls on omnipath_intercell, intercell_connections, get_partners,
and intercell_connections
Value
A list of OmniPath resources formatted according to the method pipes
saezlab/ligrec_decoupler documentation built on Nov. 8, 2023, 11:54 a.m.
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| compile_ligrec | R Documentation |
Function to get unfiltered intercell resources For each resource and OmniPath variant compiles tables of ligands, receptors and interactions
Description
Function to get unfiltered intercell resources For each resource and OmniPath variant compiles tables of ligands, receptors and interactions
Usage
compile_ligrec(lr_pipeline = TRUE)
Arguments
lr_pipeline |
bool whether to format for lr_pipeline and remove duplicate LRs (mainly from composite OmniDB due to category (adhesion vs lr)) |
Details
calls on omnipath_intercell, intercell_connections, get_partners, and intercell_connections
Value
A list of OmniPath resources formatted according to the method pipes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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