cytotalk_score: Compute cross-talk score from a Seurat Object (DEPRECATED)
In saezlab/ligrec_decoupler: LIANA: a LIgand-receptor ANalysis frAmework
View source: R/crosstalk_funs.R
cytotalk_score R Documentation
Compute cross-talk score from a Seurat Object (DEPRECATED)
Description
Compute cross-talk score from a Seurat Object (DEPRECATED)
Usage
cytotalk_score(lr_res, sce, score_col, assay.type, seed, ...)
Arguments
lr_res
liana_pipe results
sce
SingleCellExperiment object
score_col
name of the score column
assay.type
data slot to be used
seed
random seed
...
placeholder
Details
This function executes all the required functions to extract
and compute the cross-talk scores as defined by the Cytotalk authors.
saezlab/ligrec_decoupler documentation built on Nov. 8, 2023, 11:54 a.m.
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View source: R/crosstalk_funs.R
| cytotalk_score | R Documentation |
Compute cross-talk score from a Seurat Object (DEPRECATED)
Description
Compute cross-talk score from a Seurat Object (DEPRECATED)
Usage
cytotalk_score(lr_res, sce, score_col, assay.type, seed, ...)
Arguments
lr_res |
liana_pipe results |
sce |
SingleCellExperiment object |
score_col |
name of the score column |
assay.type |
data slot to be used |
seed |
random seed |
... |
placeholder |
Details
This function executes all the required functions to extract and compute the cross-talk scores as defined by the Cytotalk authors.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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