API for saezlab/ocean
metabolic enzyme enrichment analysis
| Global functions | |
|---|---|
| buildTree | Man page Source code |
| build_grps | Source code |
| build_reactions_df | Source code |
| build_reactions_list | Source code |
| checkInputs | Man page Source code |
| compress_transporters | Man page |
| condense_metabolite_set | Man page Source code |
| expressed_genes | Man page |
| forestMaker | Man page Source code |
| generate_sifAtt | Man page |
| get_pure_kegg_ids | Man page Source code |
| hello | Man page |
| limma_res_to_ttop_list | Man page Source code |
| makeContrastsAlt | Man page Source code |
| make_df_and_targets_great_again | Man page Source code |
| make_discrete_palette | Man page Source code |
| map_pathways_to_metabolites | Man page Source code |
| mapping_table | Man page |
| metactivity | Man page Source code |
| model_to_pathway_sif | Man page Source code |
| nicePCA | Man page Source code |
| nitrogen_tracking | Man page Source code |
| pathway_HM | Man page Source code |
| plotMetaboliteContribution | Man page Source code |
| plot_reaction_network | Man page Source code |
| plot_significant_pathways | Man page Source code |
| prepare_metabolite_set | Man page Source code |
| prepare_regulon_df | Man page Source code |
| rearrange_dataframe | Man page Source code |
| recon2_redhuman | Man page |
| remove_cofactors | Man page Source code |
| runLimma | Man page Source code |
| split_transaminases | Man page Source code |
| t_table_metactivity_input_formater | Man page Source code |
| target_set_from_forest_2 | Man page Source code |
| translate_complexes | Man page Source code |
| translate_network_metab_ids | Source code |
| translate_results | Man page Source code |
| ttopFormatter | Man page Source code |
| ttop_list_to_log2FC_table | Man page Source code |
| ttop_list_to_t_table | Man page Source code |
