metactivity: metactivity

In saezlab/ocean: metabolic enzyme enrichment analysis

metactivity

Description

Use a mean enrichement statistic with shuffling-based normalisation (preserving metabolic compartment information) to compute the metabolic enzme normalised enrichment score, based on its upstream and downstream metabolites

Usage

metactivity(
  metabolomic_t_table,
  regulons_df,
  compartment_pattern = "",
  k = 1000,
  seed = 1337
)

Arguments

metabolomic_t_table	ipsum...
regulons_df	ipsum...
compartment_pattern	ipsum...
k	ipsum...

Value

ipsum...

saezlab/ocean documentation built on Nov. 12, 2024, 5 a.m.