prepare_metabolite_set: prepare_metabolite_set

In saezlab/ocean: metabolic enzyme enrichment analysis

prepare_metabolite_set

Description

This functions create a series of metabolic-enzyme set collections over a range of penalties (see tutorial)

Usage

prepare_metabolite_set(penalty_range, forest, measured_metabolites)

Arguments

penalty_range	numeric vector, between minimum 1 and maximum 9
forest	list, a forest representation of a metabolic network.
measured_metabolites	character vector, names of measured metabolites

Value

a series of metabolic-enzyme set collections

saezlab/ocean documentation built on Nov. 12, 2024, 5 a.m.