Man pages for saezlab/ocean
metabolic enzyme enrichment analysis
| buildTree | buildtree |
| checkInputs | checkInputs |
| compress_transporters | 'compress_transporters' |
| condense_metabolite_set | condense_metabolite_set |
| expressed_genes | expressed_genes |
| forestMaker | forestMaker |
| generate_sifAtt | generate_sifAtt |
| get_pure_kegg_ids | 'get_pure_kegg_ids' |
| hello | Hello, World! |
| limma_res_to_ttop_list | limma_res_to_ttop_list |
| makeContrastsAlt | 'makeContrastsAlt' |
| make_df_and_targets_great_again | 'make_df_and_targets_great_again' |
| make_discrete_palette | make_discrete_palette |
| map_pathways_to_metabolites | 'map_pathways_to_metabolites' |
| mapping_table | mapping_table |
| metactivity | metactivity |
| model_to_pathway_sif | 'model_to_pathway_sif' |
| nicePCA | 'nicePCA' |
| nitrogen_tracking | 'nitrogen_tracking' |
| pathway_HM | pathway_HM |
| plotMetaboliteContribution | plotMetaboliteContribution |
| plot_reaction_network | plot_reaction_network |
| plot_significant_pathways | 'plot_significant_pathways' |
| prepare_metabolite_set | prepare_metabolite_set |
| prepare_regulon_df | prepare_regulon_df |
| rearrange_dataframe | 'rearrange_dataframe' |
| recon2_redhuman | recon2_redhuman |
| remove_cofactors | 'remove_cofactors' |
| runLimma | 'runLimma' |
| split_transaminases | 'split_transaminases' |
| target_set_from_forest_2 | target_set_from_forest_2 |
| translate_complexes | 'translate_complexes' |
| translate_results | translate_results |
| t_table_metactivity_input_formater | t_table_metactivity_input_formater |
| ttopFormatter | 'ttopFormatter' |
| ttop_list_to_log2FC_table | ttop_list_to_log2FC_table |
| ttop_list_to_t_table | ttop_list_to_t_table |
