lcalc: calculate L50 (other other slice) for a given vector of...
In sagrudd/cDNA_tutorial: Tutorial For Nanopore Sequence Based Gene Expression Profiling
Description
Usage
Arguments
Value
Author(s)
References
Description
L50 - number of scaffolds that are longer than, or equal to, the N50 length
and therefore include half the bases of the assembly
Usage
1
lcalc(len.vector, n)
Arguments
len.vector
a vector of sequence lengths
n
the value to calculate L for (L50 == 0.5 etc)
Value
L.value
Author(s)
Oxford Nanopore Bioinformatics, support@nanoporetech.com
References
https://www.ncbi.nlm.nih.gov/assembly/help/
sagrudd/cDNA_tutorial documentation built on May 30, 2019, 2:13 p.m.
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Description Usage Arguments Value Author(s) References
Description
L50 - number of scaffolds that are longer than, or equal to, the N50 length and therefore include half the bases of the assembly
Usage
1 | lcalc(len.vector, n)
|
Arguments
len.vector |
a vector of sequence lengths |
n |
the value to calculate L for (L50 == 0.5 etc) |
Value
L.value
Author(s)
Oxford Nanopore Bioinformatics, support@nanoporetech.com
References
https://www.ncbi.nlm.nih.gov/assembly/help/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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