volcanoPlot: Prepare a volcanoPlot of gene expression data using ggplot2

In sagrudd/cDNA_tutorial: Tutorial For Nanopore Sequence Based Gene Expression Profiling

Description

Volcano plot presents a scatter plot of the -log10(p-value) / log2 gene expression from a differential gene expression study

Volcano plot presents a scatter plot of the -log10(p-value) / log2 gene expression from a differential gene expression study

Usage

volcanoPlot(deSeqObj, lfcThreshold, adjPValueThreshold)

volcanoPlot(deSeqObj, lfcThreshold, adjPValueThreshold)

Arguments

deSeqObj	DESeq2 differential expression object
lfcThreshold	a log2 threshold required for definition of differential expression
adjPValueThreshold	minimal threshold of FDR corrected p-value for differential expression
deSeqObj	DESeq2 differential expression object
lfcThreshold	a log2 threshold required for definition of differential expression
adjPValueThreshold	minimal threshold of FDR corrected p-value for differential expression

Value

None

None

Author(s)

Oxford Nanopore Bioinformatics, [e-mail]

Oxford Nanopore Bioinformatics, [e-mail]

References

https://en.wikipedia.org/wiki/Volcano_plot_(statistics)

https://en.wikipedia.org/wiki/Volcano_plot_(statistics)

sagrudd/cDNA_tutorial documentation built on May 30, 2019, 2:13 p.m.