View source: R/metacell_Plots.R
hc_mvTypePlot2 | R Documentation |
This method shows density plots which represents the repartition of
Partial Observed Values for each replicate in the dataset.
The colors correspond to the different conditions (slot Condition in in the
dataset of class MSnSet
).
The x-axis represent the mean of intensity for one condition and one
entity in the dataset (i. e. a protein)
whereas the y-axis count the number of observed values for this entity
and the considered condition.
hc_mvTypePlot2(obj, pal = NULL, pattern, typeofMV = NULL, title = NULL)
obj |
xxx |
pal |
The different colors for conditions |
pattern |
xxx |
typeofMV |
xxx |
title |
The title of the plot |
Density plots
Samuel Wieczorek
utils::data(Exp1_R25_pept, package='DAPARdata') obj <- Exp1_R25_pept[1:100] hc_mvTypePlot2(obj, pattern = 'missing MEC', title="POV distribution") conds <- Biobase::pData(obj)$Condition pal <- ExtendPalette(length(unique(conds)), 'Dark2') hc_mvTypePlot2(obj, pattern = 'missing MEC', title="POV distribution", pal=pal)
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