GetDetailedNbPeptidesUsed: Computes the detailed number of peptides used for aggregating...
In samWieczorek/Dapar2: Tools for the Differential Analysis of Proteins Abundance with R
GetDetailedNbPeptidesUsed R Documentation
Computes the detailed number of peptides used for aggregating
each protein
Description
Method to compute the detailed number of quantified peptides used for
aggregating each protein
Usage
GetDetailedNbPeptidesUsed(X, qdata.pep)
Arguments
X
An adjacency matrix
qdata.pep
A data.frame of quantitative data
Value
A list of two items
Author(s)
Samuel Wieczorek
Examples
library(DaparToolshedData)
data(Exp1_R25_pept, package="DaparToolshedData")
protID <- "Protein_group_IDs"
X <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(10)], protID, FALSE)
ll.n <- GetDetailedNbPeptidesUsed(X,
assay(Exp1_R25_pept[seq_len(10)]))
samWieczorek/Dapar2 documentation built on Oct. 12, 2023, 9:54 a.m.
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| GetDetailedNbPeptidesUsed | R Documentation |
Computes the detailed number of peptides used for aggregating each protein
Description
Method to compute the detailed number of quantified peptides used for aggregating each protein
Usage
GetDetailedNbPeptidesUsed(X, qdata.pep)
Arguments
X |
An adjacency matrix |
qdata.pep |
A data.frame of quantitative data |
Value
A list of two items
Author(s)
Samuel Wieczorek
Examples
library(DaparToolshedData)
data(Exp1_R25_pept, package="DaparToolshedData")
protID <- "Protein_group_IDs"
X <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(10)], protID, FALSE)
ll.n <- GetDetailedNbPeptidesUsed(X,
assay(Exp1_R25_pept[seq_len(10)]))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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