GetNbPeptidesUsed: Computes the number of peptides used for aggregating each...
In samWieczorek/Dapar2: Tools for the Differential Analysis of Proteins Abundance with R
GetNbPeptidesUsed R Documentation
Computes the number of peptides used for aggregating each protein
Description
Method to compute the number of quantified peptides used for aggregating
each protein
Usage
GetNbPeptidesUsed(X, pepData)
Arguments
X
An adjacency matrix
pepData
A data.frame of quantitative data
Value
A data.frame
Author(s)
Samuel Wieczorek
Examples
library(QFeatures)
data(Exp1_R25_pept, package="DaparToolshedData")
protID <- "Protein_group_IDs"
obj.pep <- Exp1_R25_pept[seq_len(10)]
X <- BuildAdjacencyMatrix(obj.pep, protID, FALSE)
pepData <- assay(obj.pep)
GetNbPeptidesUsed(X, pepData)
samWieczorek/Dapar2 documentation built on Oct. 12, 2023, 9:54 a.m.
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| GetNbPeptidesUsed | R Documentation |
Computes the number of peptides used for aggregating each protein
Description
Method to compute the number of quantified peptides used for aggregating each protein
Usage
GetNbPeptidesUsed(X, pepData)
Arguments
X |
An adjacency matrix |
pepData |
A data.frame of quantitative data |
Value
A data.frame
Author(s)
Samuel Wieczorek
Examples
library(QFeatures)
data(Exp1_R25_pept, package="DaparToolshedData")
protID <- "Protein_group_IDs"
obj.pep <- Exp1_R25_pept[seq_len(10)]
X <- BuildAdjacencyMatrix(obj.pep, protID, FALSE)
pepData <- assay(obj.pep)
GetNbPeptidesUsed(X, pepData)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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