Files in samWieczorek/Prostar

Provides a GUI for DAPAR

.gitattributes

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

.github/workflows/R-CMD-check.yaml

.github/workflows/R-check-Bioc.yml

DESCRIPTION

NAMESPACE

Prostar.Rproj

R/prostar.R

README

README.md

_pkgdown.yml

dev/Exp2_R100_15_prot.xlsx

dev/test_mod_choose_pipeline.R dev/test_mod_open_demo_dataset.R

inst/CITATION

inst/NEWS.Rd

inst/ProstarApp/Rmd_sources/GO_Classification_Rmd.Rmd inst/ProstarApp/Rmd_sources/GO_Enrichment_Rmd.Rmd inst/ProstarApp/Rmd_sources/aggregation_Rmd.Rmd inst/ProstarApp/Rmd_sources/anaDiff_Rmd.Rmd inst/ProstarApp/Rmd_sources/descriptiveStats_Rmd.Rmd inst/ProstarApp/Rmd_sources/filtering_Rmd.Rmd inst/ProstarApp/Rmd_sources/hypothesisTest_Rmd.Rmd inst/ProstarApp/Rmd_sources/imputation_Rmd.Rmd inst/ProstarApp/Rmd_sources/normalization_Rmd.Rmd inst/ProstarApp/Rmd_sources/peptideImputation_Rmd.Rmd inst/ProstarApp/Rmd_sources/proteinImputation_Rmd.Rmd inst/ProstarApp/Rmd_sources/report.Rmd

inst/ProstarApp/dev/example_filtration_tab.txt

inst/ProstarApp/dev/moduleFiltrationExamples.R inst/ProstarApp/dev/test_choices_test_hypothesis.R inst/ProstarApp/dev/test_cols_origin_of_values.R inst/ProstarApp/dev/test_downloadHandler.R inst/ProstarApp/dev/test_modMSnSetExplorer.R inst/ProstarApp/dev/test_mod_LegendColoredExprs.R inst/ProstarApp/dev/test_mod_filtering_example.R inst/ProstarApp/dev/test_mod_plots_intensity.R inst/ProstarApp/dev/test_mod_plots_mv_histo.R inst/ProstarApp/dev/test_mod_query_metacell.R inst/ProstarApp/dev/test_mod_staticDT.R inst/ProstarApp/dev/test_shinyInput.R inst/ProstarApp/global.R

inst/ProstarApp/images/desc_corrmatrix.png

inst/ProstarApp/images/desc_density.png

inst/ProstarApp/images/desc_heatmap.png

inst/ProstarApp/images/desc_intdistrib.png

inst/ProstarApp/images/desc_mv.png

inst/ProstarApp/images/desc_pca.png

inst/ProstarApp/images/desc_quantiData.png

inst/ProstarApp/images/desc_varDist.jpg

inst/ProstarApp/images/desc_violinplot.png

inst/ProstarApp/md/FAQ.md inst/ProstarApp/md/formerReleases.md inst/ProstarApp/md/links.md inst/ProstarApp/md/prostarPresentation.md inst/ProstarApp/md/versionNotes.md inst/ProstarApp/moduleProcessUI.R inst/ProstarApp/modules/Plots/corrMatrixPlots.R

inst/ProstarApp/modules/Plots/corrMatrixPlots.R.url

inst/ProstarApp/modules/Plots/heatmapPlots.R inst/ProstarApp/modules/Plots/intdistribPlots.R inst/ProstarApp/modules/Plots/mod_MSnSetExplorer.R inst/ProstarApp/modules/Plots/moduleCC.R inst/ProstarApp/modules/Plots/moduleMSnSetExplorer.R inst/ProstarApp/modules/Plots/modulePCAPlots.R inst/ProstarApp/modules/Plots/modulePlots.R inst/ProstarApp/modules/Plots/moduleTracking.R inst/ProstarApp/modules/Plots/msnsetExplorerPlots.R inst/ProstarApp/modules/Plots/mvPlots.R inst/ProstarApp/modules/Plots/pcaPlots.R inst/ProstarApp/modules/Plots/varDistPlots.R inst/ProstarApp/modulesUI.R

inst/ProstarApp/prostar.conf

inst/ProstarApp/run.R inst/ProstarApp/server.R

inst/ProstarApp/server/desc_corrmatrix.png

inst/ProstarApp/server/mod_LegendColoredExprs.R inst/ProstarApp/server/mod_choose_pipeline.R inst/ProstarApp/server/mod_download_btns.R inst/ProstarApp/server/mod_filtering_example.R inst/ProstarApp/server/mod_open_demoDataset.R inst/ProstarApp/server/mod_plots_intensity.R inst/ProstarApp/server/mod_plots_metacell_histo.R inst/ProstarApp/server/mod_plots_tracking.R inst/ProstarApp/server/mod_popover.R inst/ProstarApp/server/mod_query_metacell.R inst/ProstarApp/server/mod_staticDT.R inst/ProstarApp/server/srv_Aggregation.R inst/ProstarApp/server/srv_AnaDiff.R inst/ProstarApp/server/srv_BugReport.R inst/ProstarApp/server/srv_BuildDesign.R inst/ProstarApp/server/srv_CheckForUpdates.R inst/ProstarApp/server/srv_ConvertData.R inst/ProstarApp/server/srv_ConvertData_MaxQuant.R inst/ProstarApp/server/srv_ConvertData_Proline.R inst/ProstarApp/server/srv_DefineRVmoduleProcess.R inst/ProstarApp/server/srv_DemoMode.R inst/ProstarApp/server/srv_DescriptiveStats.R inst/ProstarApp/server/srv_Export.R inst/ProstarApp/server/srv_FAQ.R inst/ProstarApp/server/srv_Filtering.R inst/ProstarApp/server/srv_GO_enrichment.R inst/ProstarApp/server/srv_General.R inst/ProstarApp/server/srv_Home.R inst/ProstarApp/server/srv_HypothesisTest.R inst/ProstarApp/server/srv_Imputation_PeptideLevel.R inst/ProstarApp/server/srv_Imputation_ProteinLevel.R inst/ProstarApp/server/srv_LogSession.R inst/ProstarApp/server/srv_ModuleProcess.R inst/ProstarApp/server/srv_ModulesSrv.R inst/ProstarApp/server/srv_NavbarPage.R inst/ProstarApp/server/srv_Normalization.R inst/ProstarApp/server/srv_OpenMSnset.R inst/ProstarApp/server/srv_ParamsManager.R inst/ProstarApp/server/srv_ReleaseNotes.R inst/ProstarApp/server/srv_ReloadProstar.R inst/ProstarApp/server/srv_SaveGraphics.R inst/ProstarApp/server/srv_Settings.R inst/ProstarApp/server/srv_UpdateDesign_old.R inst/ProstarApp/server/srv_UsefulLinks.R inst/ProstarApp/ui.R inst/ProstarApp/ui/ui_Aggregation.R inst/ProstarApp/ui/ui_AnaDiff.R inst/ProstarApp/ui/ui_BugReport.R inst/ProstarApp/ui/ui_CheckForUpdates.R inst/ProstarApp/ui/ui_Configure.R inst/ProstarApp/ui/ui_ConvertData.R inst/ProstarApp/ui/ui_DemoMode.R inst/ProstarApp/ui/ui_DescriptiveStatistics.R inst/ProstarApp/ui/ui_Export.R inst/ProstarApp/ui/ui_FAQ.R inst/ProstarApp/ui/ui_Filtering.R inst/ProstarApp/ui/ui_GO_Enrich.R inst/ProstarApp/ui/ui_Home.R inst/ProstarApp/ui/ui_HypothesisTest.R inst/ProstarApp/ui/ui_Imputation.R inst/ProstarApp/ui/ui_ImputationPeptideLevel.R inst/ProstarApp/ui/ui_ImputationProteinLevel.R inst/ProstarApp/ui/ui_LogSession.R inst/ProstarApp/ui/ui_NavbarPage.R inst/ProstarApp/ui/ui_Normalization.R inst/ProstarApp/ui/ui_OpenMSnSetFile.R inst/ProstarApp/ui/ui_ReleaseNotes.R inst/ProstarApp/ui/ui_ReloadProstar.R inst/ProstarApp/ui/ui_Settings.R inst/ProstarApp/ui/ui_UpdateDesign.R inst/ProstarApp/ui/ui_UsefulLinks.R

inst/ProstarApp/www/busyIndicator/busyIndicator.css

inst/ProstarApp/www/css/_variables-Prostar.scss

inst/ProstarApp/www/css/_variables-cerulean.scss

inst/ProstarApp/www/css/arrow.css

inst/ProstarApp/www/css/image.css

inst/ProstarApp/www/css/legend.css

inst/ProstarApp/www/css/prostar.css

inst/ProstarApp/www/css/sass-size.scss

inst/ProstarApp/www/favicon.ico

inst/ProstarApp/www/flashExport.swf

inst/ProstarApp/www/google-analytics.js

inst/ProstarApp/www/images/LogoProstarComplet.png

inst/ProstarApp/www/images/Ok.png

inst/ProstarApp/www/images/Problem.png

inst/ProstarApp/www/images/Rlogo.svg

inst/ProstarApp/www/images/Sam.png

inst/ProstarApp/www/images/Thomas-Burger-155.jpg

inst/ProstarApp/www/images/ajax-loader.gif

inst/ProstarApp/www/images/arrow_direction_loop_reload.png

inst/ProstarApp/www/images/arrow_direction_rotate_1.png

inst/ProstarApp/www/images/cover.jpg

inst/ProstarApp/www/images/dfPriorIssue.png

inst/ProstarApp/www/images/edyp.png

inst/ProstarApp/www/images/logo_bioconductor.gif

inst/ProstarApp/www/logo-simple.png

inst/ProstarApp/www/logo-simple_32x32.png

inst/ProstarApp/www/progressBar/progressBar.css

logo.png

man/Prostar.Rd news.md

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

tests/testthat.R tests/testthat/test_Prostar.R

toto.MSnSet

toto.rda

vignettes/Prostar_UserManual.Rnw

vignettes/Prostar_UserManual.pdf

vignettes/Prostar_UserManual.synctex.gz

vignettes/Prostar_UserManual.toc

vignettes/images/GO_tab1.png

vignettes/images/GO_tab2.png

vignettes/images/GO_tab3.png

vignettes/images/GO_tab4.png

vignettes/images/aggregation.png

vignettes/images/anadiffsum.png

vignettes/images/convert_convert.png

vignettes/images/convert_dataID.png

vignettes/images/convert_exp_featdata.png

vignettes/images/convert_sampledata.png

vignettes/images/convert_selectfile.png

vignettes/images/cp4p-choice.png

vignettes/images/cp4p-default.png

vignettes/images/cp4p-ideal.png

vignettes/images/cp4p-pb1.png

vignettes/images/cp4p-pb2.png

vignettes/images/desc_CVDist_ZoomIn.png

vignettes/images/desc_CVDist_ZoomOut.png

vignettes/images/desc_PCA.png

vignettes/images/desc_corrmatrix.png

vignettes/images/desc_fdata.png

vignettes/images/desc_heatmap.png

vignettes/images/desc_intdistrib.png

vignettes/images/desc_missValues.png

vignettes/images/desc_pdata.png

vignettes/images/desc_quantiData.png

vignettes/images/descstat-overview.png

vignettes/images/equiv-non-fig.txt

vignettes/images/export.png

vignettes/images/fdr-thresh.png

vignettes/images/filter1.png

vignettes/images/filter2.png

vignettes/images/filter3.png

vignettes/images/home.png

vignettes/images/hp.png

vignettes/images/load-pep.png

vignettes/images/load-prot.png

vignettes/images/normalisation.png

vignettes/images/peptide-basicImputation.png

vignettes/images/peptide-imp4p.png

vignettes/images/protein-MEC.png

vignettes/images/protein-POV.png

vignettes/images/pushpval.png

samWieczorek/Prostar documentation built on April 27, 2022, 7:32 a.m.