Man pages for samaperrin/JSAM
rap-around functions to help create a Joint Species Association Model through GRETA
| accentuate | Magnification of co-occurrence matrix. |
| calc_deviance | Calculate deviance |
| create_association_gradient | Species associations gradient. |
| create_lambda | Creates lambda matrix. |
| get_beta_list | Creates CI matrix. |
| get_cooc_ints | Derive parameter confidence intervals |
| get_param_ints | Derive parameter confidence intervals |
| narrowing | Subsetting of co-occurrence matrix. |
| plot_change_asc | Plot species association changes. |
| pred_cond | Conditional prediction of species at one site. |
| pred_cond_entire | Conditional prediction of species at range of sites site. |
| pred_correlation | Predictive species association matrix |
| predict_species_perc | Marginal prediction of species likelihoods at sites. |
