predict_species_perc: Marginal prediction of species likelihoods at sites.

In samaperrin/JSAM: rap-around functions to help create a Joint Species Association Model through GRETA

Description

Calculates likelihood of species presences based solely on environmental values (marignal prediction).

Usage

predict_species_perc(draws, X_newdata, site_id_newdata = NULL,
  X_assoc_newdata = NULL, species_list)

Arguments

draws	A set of mcmc draws produced by the GRETA function draws.
X_newdata	Data for new sites to predict for.
site_id_newdata	Catchment IDs for new sites.
X_assoc_newdata	Avergae association correlation matrix.
species_list	List of species names.

Value

Matrix of site x species with likelihoods of presence at every site.

samaperrin/JSAM documentation built on June 16, 2020, 9:26 a.m.