pred_cond: Conditional prediction of species at one site.

In samaperrin/JSAM: rap-around functions to help create a Joint Species Association Model through GRETA

Description

Calculates conditional likelihood of one species presences based on environmental values and presence of other species.

Usage

pred_cond(betas_shared, betas_ssv = NULL, site_env, occupancy, cooccurrence,
  focal_species, ssv = FALSE)

Arguments

betas_shared	Non species-specific enrivonmental parameters.
betas_ssv	Species-specific environmental parameters.
occupancy	Occupancy vector for all species.
cooccurrence	Cooccurrence matrix for the site (detrmined by the temperature at the site, use pred_correlation to derive this).
focal_species	Integer which dictates which species in the occupancy vector you want to test likelihood of.
ssv	Whether or not the model contains species specific variables.

Value

Value with likelihood of species at that site.

samaperrin/JSAM documentation built on June 16, 2020, 9:26 a.m.