imageGreenhouse: a function for representing a trait in the phenoarch...

In sanchezi/phisStatR: Phenoarch Greenhouse Data Analysis

Description

a function for representing a trait in the phenoarch greenhouse

Usage

imageGreenhouse(datain, trait, xcol, ycol, numrow, numcol, typeD,
  typeT = 1, ylim = NULL, typeI = "ggplot2", typeV = NULL)

Arguments

datain	a dataframe to explore
trait	character, a parameter to draw
xcol	character, name of the abscissa column (Line or x...)
ycol	character, name of the ordinate column (Position or y...)
numrow	numeric, number of rows in the greenhouse
numcol	numeric, number of columns in the greenhouse
typeD	numeric, type of dataframe (1==wide, 2==long). If typeD==2, the input dataset must contain a 'Trait' column.
typeT	numeric, type of the trait (1: quantitatif, 2: qualitatif), 1 is the default
ylim	if trait is quantitative, numeric vectors of length 2, giving the trait coordinates ranges. default = NULL
typeI	character, type of image. "video" for createDynam.R program that produces a video of an experiment, "plotly" for interactive graphic for spatial visualisation, "ggplot2" for classical graphic in report pdf , default.
typeV	character, type de video, NULL by default, "absolute" for abs. video

Details

the data.frame in input must have the positions of each pot (Line and Position columns).

For plotly type graphic, the data frame in input must also contain id of plants (Manip, Pot, Genotype, Repsce)

Value

a ggplot2 object if plotly, the print of the ggplot2 object (a graph) otherwise

Examples

# a video call
 imageGreenhouse(datain=filter(plant2,Day==vecDay[Day]),trait="plantHeight",
                 xcol="Line",ycol="Position",numrow=28,numcol=60,
                 typeD=1,typeT=1,ylim=NULL,typeI="video")
# an interactive plotly call
 test<-imageGreenhouse(datain=plant4, trait="Biomass24",xcol="Line",ycol="Position",
                 numrow=28,numcol=60,typeD=1,typeT=1, ylim=NULL,typeI="plotly")
# test is a ggplot2 object, you have to render it with: plotly::ggplotly(test)
# a classical ggplot2 call
 imageGreenhouse(datain=plant4, trait="Biomass24",xcol="Line",ycol="Position",
                numrow=28,numcol=60,typeD=1,typeT=1, ylim=NULL,typeI="ggplot2")

sanchezi/phisStatR documentation built on Nov. 14, 2019, 7:10 p.m.