API for sandraTL/PathQuantPadigm
Pathway Analysis with distance between genes and metablites
| Global functions | |
|---|---|
| Graph-class | Man page |
| allShortestPaths,Graph-method | Man page |
| associatedShortestPaths,Graph-method | Man page |
| barplot_adjustMaximalDistance | Man page |
| createGraphFromPathway | Man page |
| createIGraph,GraphElements-method | Man page |
| distanceGeneToAllMetabolite | Man page |
| finalReactionEdgeDF | Man page |
| fromAssosDFEntryToIGraphIdDF,Graph-method | Man page |
| getCompoundNodeKgmlId | Man page |
| getDataFrameOfDuplicateCompounds | Man page |
| getDistanceAll | Man page |
| getDistanceAsso | Man page |
| getFinalAssoDfSd,Graph-method | Man page |
| getFinalDFSHortestDistance,Graph-method | Man page |
| getHeadTailKgmlIdOfEdge | Man page |
| getIdGeneInGraph,Graph-method | Man page |
| getIdMetabolitesInGraph,Graph-method | Man page |
| getListEdgeFromGeneKGML | Man page |
| getListNodeFromKGML | Man page |
| getListReactionFromKGML | Man page |
| getPathwayKGML | Man page |
| heatmapFunction | Man page |
| hello | Man page |
| igraph-class | Man page |
| mergeRowsWithSmallestValueByKEGGId | Man page |
| mergeVectorsLowerValues | Man page |
| permutationFunction | Man page |
| removeRowsDistanceAll | Man page |
| unlistEdgeReactionCol | Man page |
