distanceGeneToAllMetabolite: function that output a barplot graph related to one specific...

In sandraTL/PathQuantPadigm: Pathway Analysis with distance between genes and metablites

Description

for param data: gene = KEGGid of gene hsa:... metabolites : KEGGid of metabolites C.... for param pathwayId : KEGG id of pathways without ':' ex: hsa01100 for param gene : is a gene in data ex: hsa:8801

Usage

distanceGeneToAllMetabolite(pathwayId, associatedGeneMetaDF,
  completeMetaboliteDF, gene)

Arguments

pathwayId,

data(gene, metabolites), gene

Examples

barplotFunction(hsa01100, associatedGeneMetaDF,
 completeMetaboliteDF, gene)
Serious need to refactor this function in multiple ones
It is way to long
get all shortest paths from data entry
adjust gene parameter
add metabolite row
get a subset of shortestsPathsDF contaning only geneOf interest, gene
and metaboltie column
get frequency of every value until the maxVal found + Inf val
initiation of values
creation of vector to fill bar colors automatically
initiation of values
creation of vector to fill bar colors automatically

sandraTL/PathQuantPadigm documentation built on May 29, 2019, 1:46 p.m.