Description Usage Arguments Examples
Permutation test to evauluate if gene-metabolite associations pairs are significantly closer than randomly selected gene-metabolite pairs
1 2 | permutationFunction(pathwayId, data, geneMeasured, metaboliteMeasured,
permutation, output = c("medians", "pvalue", "histogram"))
|
data, |
data.frame() colunm c(gene, metabolite) representing association between them for each row geneMeasured, list of evaluated genes in study (associated and not associated) metaboliteMeasured, list of measured metabolites in study (associated and not associated) permutation, number of permutation to execute output, "medians" median value of permutated sets - "pvalue" - "histogram" |
1 2 3 4 5 |
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