Files in sandraTL/PathQuantPadigm
Pathway Analysis with distance between genes and metablites

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Examples.Rmd
Examples.docx
Examples.html
GLS2.png
NAMESPACE
PADIGM.Rproj
R/.Rapp.history
R/GenerateXlsxFiles.R R/Graph.R R/PermutationFunction.R R/Test/RunitTest.R R/Test/runitc2f.R R/Untitled.R R/barplotFunction.R R/compoundListFunctions.R R/dataFrameFunctions.R R/dataVsKeggInfoFunctions.R R/edgeListFunctions.R R/extractingKGMLfromKEGG.R R/graphFunctions.R R/heatmapFunction.R R/parseXML.R README.md
TYMP.png
assoDistance.xlsx
heatmapAsso1.png
man/Graph-class.Rd man/allShortestPaths-Graph-method.Rd man/associatedShortestPaths-Graph-method.Rd man/barplot_adjustMaximalDistance.Rd man/createGraphFromPathway.Rd man/createIGraph-GraphElements-method.Rd man/distanceGeneToAllMetabolite.Rd man/finalReactionEdgeDF.Rd man/fromAssosDFEntryToIGraphIdDF-Graph-method.Rd man/getCompoundNodeKgmlId.Rd man/getDataFrameOfDuplicateCompounds.Rd man/getDistanceAll.Rd man/getDistanceAsso.Rd man/getFinalAssoDfSd-Graph-method.Rd man/getFinalDFSHortestDistance-Graph-method.Rd man/getHeadTailKgmlIdOfEdge.Rd man/getIdGeneInGraph-Graph-method.Rd man/getIdMetabolitesInGraph-Graph-method.Rd man/getListEdgeFromGeneKGML.Rd man/getListNodeFromKGML.Rd man/getListReactionFromKGML.Rd man/getPathwayKGML.Rd man/heatmapFunction.Rd man/hello.Rd man/igraph-class.Rd man/mergeRowsWithSmallestValueByKEGGId.Rd man/mergeVectorsLowerValues.Rd man/permutationFunction.Rd man/removeRowsDistanceAll.Rd man/unlistEdgeReactionCol.Rd
permutations.png
shinAndal.xlsx
tests/testthat/test-getDistanceAsso.R
sandraTL/PathQuantPadigm documentation built on May 26, 2017, 12:28 a.m.