cal_scalefactor: cal_scalefactor
In sankaranlab/SCAVENGE: Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
View source: R/cal_scalefactor.R
cal_scalefactor R Documentation
cal_scalefactor
Description
Used for generate a scale factor from bias-corrected Z score
for TRS scale and normalization.
Usage
cal_scalefactor(z_score, percent_cut = 0.01)
Arguments
z_score
a numeric vector that is original Z scores for
individual cells calculated from gchromVAR.
percent_cut
a numeric number (0, 1) indicating what percentage of
most enriched cells will be selected to calculate scale factor.
Value
a numeric value
Examples
z_score <- example_results$mono_mat$z_score
sf <- cal_scalefactor(z_score = z_score)
sankaranlab/SCAVENGE documentation built on March 2, 2023, 2:17 a.m.
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View source: R/cal_scalefactor.R
| cal_scalefactor | R Documentation |
cal_scalefactor
Description
Used for generate a scale factor from bias-corrected Z score for TRS scale and normalization.
Usage
cal_scalefactor(z_score, percent_cut = 0.01)
Arguments
z_score |
a numeric vector that is original Z scores for individual cells calculated from gchromVAR. |
percent_cut |
a numeric number (0, 1) indicating what percentage of most enriched cells will be selected to calculate scale factor. |
Value
a numeric value
Examples
z_score <- example_results$mono_mat$z_score sf <- cal_scalefactor(z_score = z_score)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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