seedindex: seedindx
In sankaranlab/SCAVENGE: Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
seedindex R Documentation
seedindx
Description
used for generate seed cell index from bias-corrected Z score
Usage
seedindex(z_score, percent_cut = 0.05)
Arguments
z_score
a numeric vector that is original Z scores for individual
cells calculated from gchromVAR.
percent_cut
a numeric number (0, 1) indicating what percentage
of cells will be selected as seed cells if too many cells fit
the P value<0.05 cutoff.
Value
a logical vector indicating seed cells or not.
Examples
z_score <- example_results$mono_mat$z_score
seed_idx <- seedindex(z_score = z_score, percent_cut = 0.1)
sankaranlab/SCAVENGE documentation built on March 2, 2023, 2:17 a.m.
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| seedindex | R Documentation |
seedindx
Description
used for generate seed cell index from bias-corrected Z score
Usage
seedindex(z_score, percent_cut = 0.05)
Arguments
z_score |
a numeric vector that is original Z scores for individual cells calculated from gchromVAR. |
percent_cut |
a numeric number (0, 1) indicating what percentage of cells will be selected as seed cells if too many cells fit the P value<0.05 cutoff. |
Value
a logical vector indicating seed cells or not.
Examples
z_score <- example_results$mono_mat$z_score seed_idx <- seedindex(z_score = z_score, percent_cut = 0.1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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