In saramortara/rocc: Workflows for biodiversity data download and cleaning

knitr::opts_chunk$set(collapse = TRUE,
                      comment = "#>",
                      eval = TRUE)

Installing and loading the package:

devtools::install_github("liibre/Rocc")

This package also downloads records from from GBIF and jabot collections. The function rgbif2() encapulates funtions from rgbif package to receive a species scientific name and return the output as a .csv file written on disk.

#library(Rocc)
devtools::load_all() # for development

# Using the funtion **rjabot**

## Search by species scientific name
j01 <- rjabot(filename = "jabot-01", 
               scientificName = "Prepusa montana")

## Example 02: search by species name and province
j02 <- rjabot(filename = "jabot-02", 
              scientificName = "Prepusa Montana",
              stateProvince = "Minas Gerais")
## Example 03: search by species name and collection

j03 <- rjabot(filename = "jabot-03", 
              scientificName = "Prepusa Montana",
              stateProvince = "RB")

dim(j01$data)
dim(j02$data)
dim(j03$data)
# all examples provide the same output :facepalm:

Using the funtion rgbif2

g01 <- rgbif2(filename = "gbif-01",
              species = "Aspidosperma limae")

dim(g01)

g02 <- rgbif2(filename = "gbif-02", 
              species = "Aspidosperma melanocalyx")
dim(g02)