make_gene_network: Creating gene-by-gene network

In sarbal/EGAD: Extending guilt by association by degree

Description

The function creates a gene-by-gene matrix with binary entries indicating interaction (1) or no interaction (0) between the genes.

Usage

make_gene_network(data, list)

Arguments

data	2-column matrix, each row a pair indicating a relationship or interaction
list	string array of genes

Value

net matrix binary characterizing interactions

Examples

gene.list <- paste('gene', 1:100, sep='')
data <- matrix(0,nrow=100, ncol=2)
data[,1] <- sample(gene.list, 100)
data[,2] <- sample(gene.list, 100)
net <- make_gene_network(data, gene.list)

sarbal/EGAD documentation built on May 5, 2021, 5:10 p.m.