gene.enh.desc: Gene-Enhancer descriptives

gene.enh.descR Documentation

Gene-Enhancer descriptives

Description

A data frame with gene-level descriptions of enhancer properties using enhancers.dnase_thurman.0. Used in the adjustment of proximity test to enhancers.

gene_id

The Entrez ID for the a gene

avg_denh_emp

The empirical average distance to an enhancer from 90 ENCODE ChIP-seq datasets. This is used as the adjustment.

num_enh

The number of enhancers assigned to the gene, defined by closest gene TSS

avgdenh

The theoretical average distance to an enhancer assuming every base pair on the genome is equally likely to have a peak binding.

Usage

gene.enh.desc

Format

An object of class data.frame with 21600 rows and 4 columns.


sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.