gene.enh.desc: Gene-Enhancer descriptives
In sartorlab/chipenrich.data: Companion package to chipenrich
gene.enh.desc R Documentation
Gene-Enhancer descriptives
Description
A data frame with gene-level descriptions of enhancer properties using enhancers.dnase_thurman.0. Used in the adjustment of proximity test to enhancers.
- gene_id
The Entrez ID for the a gene
- avg_denh_emp
The empirical average distance to an enhancer from 90 ENCODE ChIP-seq datasets. This is used as the adjustment.
- num_enh
The number of enhancers assigned to the gene, defined by closest gene TSS
- avgdenh
The theoretical average distance to an enhancer assuming every base pair on the genome is equally likely to have a peak binding.
Usage
gene.enh.desc
Format
An object of class data.frame with 21600 rows and 4 columns.
sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.
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| gene.enh.desc | R Documentation |
Gene-Enhancer descriptives
Description
A data frame with gene-level descriptions of enhancer properties using enhancers.dnase_thurman.0. Used in the adjustment of proximity test to enhancers.
- gene_id
The Entrez ID for the a gene
- avg_denh_emp
The empirical average distance to an enhancer from 90 ENCODE ChIP-seq datasets. This is used as the adjustment.
- num_enh
The number of enhancers assigned to the gene, defined by closest gene TSS
- avgdenh
The theoretical average distance to an enhancer assuming every base pair on the genome is equally likely to have a peak binding.
Usage
gene.enh.desc
Format
An object of class data.frame with 21600 rows and 4 columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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