geneset.oncogenic.hsa: geneset.oncogenic.hsa genesets for Oncogenic Signatures...

In sartorlab/chipenrich.data: Companion package to chipenrich

geneset.oncogenic.hsa genesets for Oncogenic Signatures (MSigDB)

Description

Oncogenic Signatures (MSigDB) (oncogenic) genesets. All genesets are required to have >= 10 Entrez IDs. Built on Mon Oct 16 18:47:23 2017.

Usage

geneset.oncogenic.hsa

Format

A GeneSet object with the following slots:

type

A character indicating the type of genesets, e.g. GOBP.

dburl

A character of the URL of the database underlying the genesets.

organism

A character of the organism, e.g. Homo sapiens.

set.gene

An environment containing a list whose keys are database specific accessions (e.g. GO IDs for GO terms), and whose elements are character vectors of Entrez Gene IDs.

all.genes

A character vector of all the Entrez Gene IDs contained over all the genesets in this type.

set.name

An environment containing a list whose keys are database specific accessions, and whose elements are human readable geneset names.

Source

http://software.broadinstitute.org/gsea/msigdb/collections.jsp#C6

sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.