geneset.reactome.dre: geneset.reactome.dre genesets for Danio rerio

In sartorlab/chipenrich.data: Companion package to chipenrich

geneset.reactome.dre genesets for Danio rerio

Description

Reactome genesets for Danio rerio. All genesets are required to have >= 10 Entrez IDs. Built on Tue Mar 28 13:03:21 2017.

Usage

geneset.reactome.dre

Format

A GeneSet object with the following slots:

type

A character indicating the type of genesets, e.g. Reactome.

dburl

A character of the URL of the database underlying the genesets.

organism

A character of the organism, e.g. Homo sapiens.

set.gene

An environment containing a list whose keys are database specific accessions (e.g. R-HSA-109688), and whose elements are character vectors of Entrez Gene IDs.

all.genes

A character vector of all the Entrez Gene IDs contained over all the genesets in this type.

set.name

An environment containing a list whose keys are database specific accessions, and whose elements are human readable geneset names.

Source

http://www.reactome.org/download/current/NCBI2Reactome_All_Levels.txt downloaded on 2017-03-19

sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.