Files in sartorlab/methylSig
MethylSig: Differential Methylation Testing for WGBS and RRBS Data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/diff_binomial.R
R/diff_dss_fit.R
R/diff_dss_test.R
R/diff_methylsig.R
R/filter_loci_by_coverage.R
R/filter_loci_by_group_coverage.R
R/filter_loci_by_location.R
R/methylSig-data.R
R/methylSig-package.R
R/sysdata.rda
R/tile_by_regions.R
R/tile_by_windows.R
README.md
data-raw/01-create_cov_files.R
data-raw/02-create_bsseq_rda.R
data-raw/03-create_internal_rda.R
data-raw/create_package.R
data/bsseq_destranded.rda
data/bsseq_multichrom.rda
data/bsseq_stranded.rda
data/promoters_gr.rda
inst/CITATION
inst/extdata/bis_cov1.cov
inst/extdata/bis_cov2.cov
inst/extdata/bis_cov3.cov
inst/extdata/bis_cov4.cov
man/bsseq_destranded.Rd
man/bsseq_multichrom.Rd
man/bsseq_stranded.Rd
man/diff_binomial.Rd
man/diff_dss_fit.Rd
man/diff_dss_test.Rd
man/diff_methylsig.Rd
man/filter_loci_by_coverage.Rd
man/filter_loci_by_group_coverage.Rd
man/filter_loci_by_location.Rd
man/methylSig.Rd
man/promoters_gr.Rd
man/tile_by_regions.Rd
man/tile_by_windows.Rd
tests/testthat.R
tests/testthat/test-diff_binomial.R
tests/testthat/test-diff_dss_fit.R
tests/testthat/test-diff_dss_test.R
tests/testthat/test-diff_methylsig.R
tests/testthat/test-filter_loci_by_coverage.R
tests/testthat/test-filter_loci_by_group_coverage.R
tests/testthat/test-filter_loci_by_location.R
tests/testthat/test-tile_by_regions.R
tests/testthat/test-tile_by_windows.R
vignettes/.gitignore
vignettes/updating-methylSig-code.Rmd
vignettes/using-methylSig.Rmd
