methylSig: MethylSig: Differential Methylation Testing for WGBS and RRBS...
In sartorlab/methylSig: MethylSig: Differential Methylation Testing for WGBS and RRBS Data
methylSig R Documentation
MethylSig: Differential Methylation Testing for WGBS and RRBS Data
Description
MethylSig is a package for testing for
differentially methylated cytosines (DMCs) or regions (DMRs) in
whole-genome bisulfite sequencing (WGBS) or reduced representation
bisulfite sequencing (RRBS) experiments. MethylSig uses a beta
binomial model to test for significant differences between groups of
samples. Several options exist for either site-specific or sliding
window tests, and variance estimation.
methylSig functions
filter_loci_by_coverage()
filter_loci_by_snps()
tile_by_regions()
tile_by_windows()
filter_loci_by_group_coverage()
diff_binomial()
diff_methylsig()
diff_methylsig_dss()
annotate_diff()
visualize_diff()
region_enrichment_diff()
Author(s)
Maintainer: Raymond G. Cavalcante rcavalca@umich.edu
Authors:
Yongseok Park yongpark@pitt.edu
See Also
Useful links:
Report bugs at https://github.com/sartorlab/methylSig/issues
sartorlab/methylSig documentation built on Aug. 22, 2024, 5:58 p.m.
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| methylSig | R Documentation |
MethylSig: Differential Methylation Testing for WGBS and RRBS Data
Description
MethylSig is a package for testing for differentially methylated cytosines (DMCs) or regions (DMRs) in whole-genome bisulfite sequencing (WGBS) or reduced representation bisulfite sequencing (RRBS) experiments. MethylSig uses a beta binomial model to test for significant differences between groups of samples. Several options exist for either site-specific or sliding window tests, and variance estimation.
methylSig functions
filter_loci_by_coverage() filter_loci_by_snps() tile_by_regions() tile_by_windows() filter_loci_by_group_coverage() diff_binomial() diff_methylsig() diff_methylsig_dss() annotate_diff() visualize_diff() region_enrichment_diff()
Author(s)
Maintainer: Raymond G. Cavalcante rcavalca@umich.edu
Authors:
Yongseok Park yongpark@pitt.edu
See Also
Useful links:
Report bugs at https://github.com/sartorlab/methylSig/issues
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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