sartorlab/methylSig: MethylSig: Differential Methylation Testing for WGBS and RRBS Data
MethylSig is a package for testing for differentially methylated cytosines (DMCs) or regions (DMRs) in whole-genome bisulfite sequencing (WGBS) or reduced representation bisulfite sequencing (RRBS) experiments. MethylSig uses a beta binomial model to test for significant differences between groups of samples. Several options exist for either site-specific or sliding window tests, and variance estimation.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DNAMethylation DifferentialMethylation Epigenetics MethylSeq Regression |
| Maintainer | |
| License | GPL-3 |
| Version | 1.11.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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