sartorlab/methylSig: MethylSig: Differential Methylation Testing for WGBS and RRBS Data

MethylSig is a package for testing for differentially methylated cytosines (DMCs) or regions (DMRs) in whole-genome bisulfite sequencing (WGBS) or reduced representation bisulfite sequencing (RRBS) experiments. MethylSig uses a beta binomial model to test for significant differences between groups of samples. Several options exist for either site-specific or sliding window tests, and variance estimation.

Getting started

Package details

Bioconductor views DNAMethylation DifferentialMethylation Epigenetics MethylSeq Regression
Maintainer
LicenseGPL-3
Version1.5.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("sartorlab/methylSig")
sartorlab/methylSig documentation built on May 27, 2021, 10:03 a.m.