Man pages for sartorlab/methylSig
MethylSig: Differential Methylation Testing for WGBS and RRBS Data
| bsseq_destranded | BSseq object read from destranded coverage files |
| bsseq_multichrom | BSseq object with loci on multiple chromosomes |
| bsseq_stranded | BSseq object read from stranded coverage files |
| diff_binomial | Differential methylation analysis using binomial model |
| diff_dss_fit | Performs model fit for general experimental design |
| diff_dss_test | Calculates differential methylation statistics under general... |
| diff_methylsig | Calculates differential methylation statistics using a... |
| filter_loci_by_coverage | Filter BSseq object by coverage |
| filter_loci_by_group_coverage | Filter loci based on coverage threshold per sample per group |
| filter_loci_by_location | Remove loci by overlap with a 'GRanges' object |
| methylSig | MethylSig: Differential Methylation Testing for WGBS and RRBS... |
| promoters_gr | GRanges object with collapsed promoters on chr21 and chr22 |
| tile_by_regions | Group cytosine / CpG level data into regions based on genomic... |
| tile_by_windows | Group cytosine / CpG level data into regions based on genomic... |
