gene.coexp: Compute Co-expression Between Genes
In saschajung/Intercom: Reconstruction of Functional Cell-Cell Communication Networks
gene.coexp R Documentation
Compute Co-expression Between Genes
Description
The function calculates the coexpression of genes in each row of a given data frame using the gene expression table.
Usage
gene.coexp(exp.tbl, gene.frame, ncores = 4)
Arguments
exp.tbl
Gene expression matrix/data frame to calculate coexpression of genes.
gene.frame
A data frame with genes. The coexpression is calculated for genes in each row.
ncores
Number of cores to be used (Default : 4)
Value
gene.frame data frame with an additional column corresponding to the number of cells coexpressing the genes.
saschajung/Intercom documentation built on May 27, 2023, 5:11 p.m.
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| gene.coexp | R Documentation |
Compute Co-expression Between Genes
Description
The function calculates the coexpression of genes in each row of a given data frame using the gene expression table.
Usage
gene.coexp(exp.tbl, gene.frame, ncores = 4)
Arguments
exp.tbl |
Gene expression matrix/data frame to calculate coexpression of genes. |
gene.frame |
A data frame with genes. The coexpression is calculated for genes in each row. |
ncores |
Number of cores to be used (Default : 4) |
Value
gene.frame data frame with an additional column corresponding to the number of cells coexpressing the genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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