BridgeCellsRepresentation | R Documentation |
Construct a dictionary representation for each unimodal dataset
BridgeCellsRepresentation(
object.list,
bridge.object,
object.reduction,
bridge.reduction,
laplacian.reduction = "lap",
laplacian.dims = 1:50,
bridge.assay.name = "Bridge",
return.all.assays = FALSE,
l2.norm = TRUE,
verbose = TRUE
)
object.list |
A list of Seurat objects |
bridge.object |
A multi-omic bridge Seurat which is used as the basis to represent unimodal datasets |
object.reduction |
A list of dimensional reductions from object.list used to be reconstructed by bridge.object |
bridge.reduction |
A list of dimensional reductions from bridge.object used to reconstruct object.reduction |
laplacian.reduction |
Name of bridge graph laplacian dimensional reduction |
laplacian.dims |
Dimensions used for bridge graph laplacian dimensional reduction |
bridge.assay.name |
Assay name used for bridge object reconstruction value (default is 'Bridge') |
return.all.assays |
Whether to return all assays in the object.list. Only bridge assay is returned by default. |
l2.norm |
Whether to l2 normalize the dictionary representation |
verbose |
Print messages and progress |
Returns a object list in which each object has a bridge cell derived assay
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